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Question

Sodium Dodecyl Sulphate (SDS) is used while separating proteins by polyacrylamide gel electrophoresis because :

This question was previously asked in
MH SET 2021 Paper 2 Mathematical Science Question Paper (26-Sep-2021)
The correct answer is

it binds to proteins and confers a uniform negative charge density thereby making them move during electrophoresis

SDS is an anionic detergent. In SDS-PAGE the protein is boiled with SDS (and usually a reducing agent), which unfolds it and coats the polypeptide chain with detergent molecules.

About 1.4 g of SDS binds per gram of protein, roughly one SDS molecule per two amino acid residues, so every polypeptide acquires a large negative charge that is proportional to its length. The intrinsic charge of the protein becomes negligible.

Because the charge-to-mass ratio is now nearly the same for all polypeptides, they all migrate towards the anode and the sieving action of the gel separates them only by size, which allows molecular-weight estimation.

Solubilization is a side effect, not the reason SDS is used for separation; SDS has no role in lowering buffer surface tension for the run; and far from stabilizing proteins, it denatures them.

Hence, it binds to proteins and confers a uniform negative charge density thereby making them move during electrophoresis.

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