Pseudogenes are sequences in the genome that are similar to functional genes but have lost their ability to code for a functional product due to mutations. These mutations can include insertions, deletions, frameshifts, or premature stop codons.
The core characteristic of a pseudogene is that it is a non-functional copy of a gene. While they originate from functional genes, they accumulate disabling mutations over evolutionary time. Therefore, they typically cannot produce a protein that performs the specific, original function of the parent gene.
Based on their nature as non-functional gene copies, pseudogenes are characterized by their inability to produce a protein that performs the original function of the ancestral gene.
Consider the following multiple sequence alignment of four DNA sequences.
$\begin{matrix}A & C & T & A \\ A & C & T & G \\ A & G & T & C \\ A & G & C & T \end{matrix} $
Shannon's entropy of the above alignment is ________.
The transcription factor X binds a 10 base pair DNA stretch. In the DNA of an organism, X was found to bind at 20 distinct sites. An analysis of these 20 binding sites showed the following distribution:
| Base | Position in the binding site | |||||||||
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | |
| A | 11 | 0 | 0 | 0 | 16 | 2 | 4 | 0 | 4 | 3 |
| T | 3 | 0 | 19 | 0 | 1 | 3 | 4 | 20 | 2 | 4 |
| G | 4 | 20 | 0 | 0 | 2 | 4 | 6 | 0 | 12 | 2 |
| C | 2 | 0 | 1 | 20 | 1 | 11 | 6 | 0 | 2 | 11 |
What is the consensus sequence for the binding site of X?