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Question

All pseudogenes DO NOT code for a __________.

The correct answer is
protein with original function

Understanding Pseudogenes and Gene Function

Pseudogenes are sequences in the genome that are similar to functional genes but have lost their ability to code for a functional product due to mutations. These mutations can include insertions, deletions, frameshifts, or premature stop codons.

Why Pseudogenes Lack Original Functionality

The core characteristic of a pseudogene is that it is a non-functional copy of a gene. While they originate from functional genes, they accumulate disabling mutations over evolutionary time. Therefore, they typically cannot produce a protein that performs the specific, original function of the parent gene.

Analyzing the Options

  • Option A: protein with original function: This aligns with the definition. Pseudogenes are non-functional copies and thus do not code for a protein carrying out the gene's original task.
  • Option B: protein with altered function: While most pseudogenes don't produce functional proteins at all, some might theoretically produce truncated or non-functional protein fragments. However, the lack of *original* function is the defining trait.
  • Option C: RNA with coding sequence: Pseudogenes are often transcribed into RNA, but this RNA usually lacks a complete or correct coding sequence required for protein synthesis.
  • Option D: RNA with regulatory function: Some pseudogenes can be transcribed into RNA molecules that *do* have regulatory functions, acting as decoys or influencing other genes. Thus, they are not something pseudogenes *universally* fail to code for.

Conclusion on Pseudogene Products

Based on their nature as non-functional gene copies, pseudogenes are characterized by their inability to produce a protein that performs the original function of the ancestral gene.

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Important Questions from Molecular Structure of Genes and Chromosomes

  1. Consider the following multiple sequence alignment of four DNA sequences.

    $\begin{matrix}A & C & T & A \\ A & C & T & G \\ A & G & T & C \\ A & G & C & T  \end{matrix} $

    Shannon's entropy of the above alignment is ________.

  2. C-value paradox refers to
  3. The transcription factor X binds a 10 base pair DNA stretch. In the DNA of an organism, X was found to bind at 20 distinct sites. An analysis of these 20 binding sites showed the following distribution:

    Base  Position in the binding site
    12345678910
    A110001624043
    T301901342024
    G420002460122
    C2012011160211

    What is the consensus sequence for the binding site of X?

  4. Which of the following statements are CORRECT when a protein sequence database is searched using the BLAST algorithm?
    P. A larger E-value indicates higher sequence similarity
    Q. E-value < $10^{-10}$ indicates sequence homology
    R. A higher BLAST score indicates higher sequence similarity
    S. E-value > $10^{10}$ indicates sequence homology
  5. Which one of the following DNA sequences carries an invert repeat?
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