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Question

The number of different possible ways of forming five intramolecular disulfide bonds with ten cysteine residues of a protein is ________

Understanding Disulfide Bond Formation

The question asks for the number of ways to form 5 intramolecular disulfide bonds using 10 cysteine residues. A disulfide bond forms between two cysteine residues. Since we have 10 cysteines and need 5 bonds, all cysteines are involved in forming pairs.

Calculating Possible Pairings

This is a combinatorial problem of pairing up 10 distinct items (cysteine residues). We can calculate this using the formula for partitioning $2n$ items into $n$ pairs, which is given by the double factorial $(2n-1)!!$.

In this case, $N = 10$ cysteine residues, so $n = N/2 = 5$ pairs (disulfide bonds).

The number of ways is calculated as $(2 \times 5 - 1)!! = 9!!$.

Double Factorial Calculation

The double factorial $9!!$ is calculated as:

$ 9!! = 9 \times 7 \times 5 \times 3 \times 1 $

Performing the multiplication:

$ 9 \times 7 = 63 $ $ 63 \times 5 = 315 $ $ 315 \times 3 = 945 $ $ 945 \times 1 = 945 $

Therefore, there are 945 different possible ways to form five intramolecular disulfide bonds with ten cysteine residues.

Alternative Combinatorial Calculation

Alternatively, we can choose pairs sequentially and account for overcounting:

  • Choose the first pair from 10 cysteines: $\binom{10}{2}$ ways.
  • Choose the second pair from the remaining 8: $\binom{8}{2}$ ways.
  • Choose the third pair from the remaining 6: $\binom{6}{2}$ ways.
  • Choose the fourth pair from the remaining 4: $\binom{4}{2}$ ways.
  • Choose the fifth pair from the remaining 2: $\binom{2}{2}$ ways.

The initial calculation is $\binom{10}{2} \times \binom{8}{2} \times \binom{6}{2} \times \binom{4}{2} \times \binom{2}{2}$.

Calculating the values:

$ \frac{10 \times 9}{2} \times \frac{8 \times 7}{2} \times \frac{6 \times 5}{2} \times \frac{4 \times 3}{2} \times \frac{2 \times 1}{2} = 45 \times 28 \times 15 \times 6 \times 1 = 113,400 $

Since the order of forming the 5 pairs does not matter, we divide by $5!$ (the number of ways to order the pairs):

$ \frac{113,400}{5!} = \frac{113,400}{120} = 945 $

Both methods confirm that there are 945 possible ways.

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Important Questions from Combinations

  1. How many ways are there to pack six copies of the same book into four identical boxes, where a box can contain as many as six books ?

  2. Let us assume a person climbing the stairs can take one stair or two stairs at a time. How many ways can this person climb a flight of eight stairs?

  3. There are 9 different rock lizard species, each with a unique colour. Lizards of 2 different species sit on a rock at any given time. The number of possible colour combinations of rock lizards seen together on a rock is _________ 
    (Answer in integer)

  4. There are nine species of Impatiens (balsams) found in laterite plateaus of the northern Western Ghats, each with a distinct colour. If a plateau has exactly 6 species, then the number of possible colour combinations in the plateau is __________. (Answer in integer)
  5. A set of 4 parallel lines intersect with another set of 5 parallel lines. How many parallelograms are formed?
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