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Question

The emission maximum of tryptophan fluorescence in a protein is ~ 335 nm. This suggests that tryptophan

The correct answer is

is in a hydrophobic environment.

Tryptophan Fluorescence in Proteins

Tryptophan (Trp) is one of the fluorescent amino acids commonly found in proteins. Its fluorescence properties are highly sensitive to its local environment within the protein structure. The emission maximum, which is the wavelength at which the fluorescence intensity is highest, provides valuable information about whether the tryptophan residue is exposed to a polar solvent (like water) or buried in a non-polar (hydrophobic) core of the protein.

Fluorescence Emission and Environment

The fluorescence emission spectrum of tryptophan shifts depending on the polarity of its surroundings. Here's a breakdown:

  • In a polar environment, such as free tryptophan in water, the emission maximum is typically observed at longer wavelengths, around 350-355 nm. This is because the excited state of tryptophan is more polar than the ground state, and in a polar solvent, solvent molecules can reorient around the excited state, stabilizing it and lowering the energy difference between the excited state and the ground state, leading to emission at longer wavelengths (red shift).
  • In a non-polar or hydrophobic environment, where solvent access is limited, the excited state is less stabilized by the surroundings. This results in a higher energy difference between the excited and ground states, leading to fluorescence emission at shorter wavelengths, typically around 330-335 nm (blue shift).

Analyzing the Given Emission Maximum (335 nm)

The question states that the emission maximum of tryptophan fluorescence in this particular protein is ~335 nm. Based on the principles described above:

  • An emission maximum around 330-335 nm is characteristic of tryptophan located in a hydrophobic or non-polar environment within the protein. This suggests that the tryptophan residue is likely buried within the protein core, shielded from the surrounding solvent.
  • An emission maximum around 350-355 nm would suggest that the tryptophan residue is solvent-exposed and in a polar environment.

Evaluating the Options

Let's consider what each option implies:

  1. is in a hydrophobic environment. As discussed, an emission maximum of 335 nm is a strong indicator of a hydrophobic environment. This aligns with the fluorescence properties of tryptophan.
  2. occurs in a helical segment. Tryptophan can be located in various secondary structures, including helical segments. However, being in a helix does not definitively determine whether the environment is hydrophobic or hydrophilic. A helix could be on the surface of the protein exposed to water (polar) or buried within the core (hydrophobic). Therefore, this option is not a direct conclusion from the 335 nm emission.
  3. has proximal cysteine residues. Proximal cysteine residues, especially if involved in disulfide bonds, can quench tryptophan fluorescence, reducing its intensity. While they might slightly influence the spectrum depending on the interaction, their primary effect is typically on intensity rather than causing a significant blue shift in the emission maximum to 335 nm due to proximity alone.
  4. is oxidized. Oxidation of tryptophan would likely destroy its fluorescent properties or drastically alter the emission spectrum in ways not typically associated with a clean blue shift to 335 nm. Oxidized tryptophan derivatives might have different fluorescence characteristics or might not fluoresce at all.

Therefore, the emission maximum of 335 nm strongly suggests that the tryptophan residue is located in a hydrophobic environment.

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Important Questions from Biochemistry

  1. The basic unit of nucleic acid is

  2. Lactose is the substrate for which of the following enzyme ?

  3. Chemical name of Vitamin E is _________.

  4. The following table lists names of scientists and advances made by them

    Column AColumn B
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    Which one of the following options correctly matches contents of column A with column B?
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