Given below are the approximate lengths of DNA fragments obtained on agarose gel electrophoresis following restriction digestion of a 3kb circular plasmid with different restriction BamHI : 0.5kb, 2.5kb HincII : 3 kb EcoRI : 3 kb EcoRI + BamHI : 0.5kb, 1kb, 1.5kb EcoRI + HincII : 3kb, 1.7kb BamHI + HincII : 0.2kb, 0.3kb, 2.5kb Based on the above information, which one of the following statements is INCORRECT?
enzymes:
The distance between EcoRI and BamHI sites is less than that between the HincII site and BamHI sites.
The problem asks us to analyze the fragment sizes obtained from restriction enzyme digestion of a 3kb circular plasmid to determine the arrangement of restriction sites and identify an incorrect statement among the given options.
A circular plasmid of 3kb is digested with different restriction enzymes and combinations, yielding the following fragments:
| Enzyme(s) | Fragments (kb) | Total Length (kb) | Number of Fragments | Number of Cut Sites |
|---|---|---|---|---|
| BamHI | 0.5, 2.5 | 3.0 | 2 | 2 |
| HincII | 3 | 3.0 | 1 | 1 |
| EcoRI | 3 | 3.0 | 1 | 1 |
| EcoRI + BamHI | 0.5, 1, 1.5 | 3.0 | 3 | 3 (1+2) |
| EcoRI + HincII | 3, 1.7 | 4.7 (Typo in input) | 2 | 2 (1+1) |
| BamHI + HincII | 0.2, 0.3, 2.5 | 3.0 | 3 | 3 (2+1) |
From the single digestions:
This confirms the first part of statement 1.
The combined digests help in mapping the relative positions of the sites.
Let's deduce the arrangement of the sites based on the fragment sizes from double digestions. We'll assume the EcoRI + HincII fragment sizes are 1.3kb and 1.7kb, summing to 3kb, as the input 3kb, 1.7kb seems to be a typo for a 3kb plasmid digestion resulting in two fragments from two single cutters.
Consider the BamHI + HincII digestion yielding 0.2kb, 0.3kb, and 2.5kb fragments. Since BamHI cuts twice and HincII once, we expect three fragments. The original BamHI sites are 0.5kb and 2.5kb apart. If HincII cuts within the 0.5kb segment, it splits it into two smaller fragments, and the 2.5kb segment remains intact. The fragments would be the 2.5kb segment and two fragments summing to 0.5kb. This matches the observed fragments: 2.5kb and (0.2kb + 0.3kb) = 0.5kb. This means the HincII site (H) is located within the 0.5kb segment between the two BamHI sites (B1 and B2), 0.2kb from one site and 0.3kb from the other.
Possible arrangement based on BamHI + HincII:
B1 ---0.2kb--- H ---0.3kb--- B2 ---2.5kb--- B1 (Circular plasmid)
Consider the EcoRI + BamHI digestion yielding 0.5kb, 1kb, and 1.5kb fragments. BamHI cuts twice, EcoRI once, giving three fragments. The BamHI sites are 0.5kb and 2.5kb apart. The 0.5kb fragment from the double digest matches one of the original BamHI fragments. This means the EcoRI site is not located within this 0.5kb segment. It must be located within the 2.5kb segment, splitting it into two pieces. The sizes of these two pieces must be 1kb and 1.5kb, since the fragments observed are 0.5kb, 1kb, and 1.5kb, and 1kb + 1.5kb = 2.5kb.
So, the EcoRI site (E) is located within the 2.5kb segment between B2 and B1 (along the longer path), splitting it into 1kb and 1.5kb pieces. Combining this with the B+H map:
Let's place B1 at position 0 on the 3kb circle.
Let's test placement of E at 1kb from B2 along the 2.5kb path. B2 is at 0.5kb. Moving 1kb along the larger segment brings us to 0.5 + 1.0 = 1.5kb from B1 (position 0). So E is at 1.5kb.
Map arrangement:
B1(0kb) --0.2kb-- H(0.2kb) --0.3kb-- B2(0.5kb) --1.0kb-- E(1.5kb) --1.5kb-- B1(3.0kb)
Let's verify this map with all digestions (using assumed 1.3kb/1.7kb for E+H):
The map B1(0) --0.2-- H(0.2) --0.3-- B2(0.5) --1.0-- E(1.5) --1.5-- B1(3.0) is consistent with all data (assuming the E+H correction).
Let's check each statement based on our map:
1. HincII and EcoRI have a single recognition site each in the plasmid.
2. HincII site is located between two BamHI sites.
3. The distance between EcoRI and BamHI sites is less than that between the HincII site and BamHI sites.
4. HincII is located closer to one BamHI site than the other.
Based on the analysis, the incorrect statement is number 3.
Which one of the following does NOT use RNA-sequencing?
Which one of the following statements related to molecular cloning procedures is INCORRECT?
Amongst the following, which one is the most appropriate strategy to sequence and assemble highly repeated regions of a genome?
Given below are statements related to various molecular techniques
A. During molecular cloning of DNA fragments, a vector and insert molecule digested with two different enzymes can never be ligated with each other.
B. Only 3' → 5' exonucleases and not 5' → 3' exonucleases can be used for digesting nucleic acids to generate blunt-ended fragments for cloning.
C. In Sanger's dideoxy sequencing method, each reaction consists of a mixture of three dNTPs and one ddNTP.
D. Self-ligation of a vector with compatible ends can be prevented by treatment with alkaline phosphatase.
Which one of the following options represents a combination of correct statements?
Given below are four DNA sequences and a set of forward and reverse primers for PCR amplification.
| Sequence | Primes | |
| A | 5' ACAATCGT.....ACTAGTAC-3' | FP: 5'-TGTTAG-3' RP: 5'-TAGTAC-3' |
| B | 5' AGTCTTAG.....ATGCCAGT - 3' | FP: 5'-AAGACT-3' RP: 5'-ACTGGC-3' |
| C | 5' CTTGACTA.....GTACAGTCA-3' | FP: 5'-CTTGAC-3' RP: 5'-TGACTG-3' |
| D | D 5' GATCTAGC.....TCAAGCAGAC-3' | FP: 5'-GATCTA-3' RP: 5'-CAGACG-3' |